Priami, Corrado and Regev, Aviv and Shapiro, Ehud and Silverman, William (2001) Application of a stochastic name-passing calculus to representation and simulation of molecular processes. UNSPECIFIED.
Abstract
We describe a novel application of a stochastic name passing calculus for the study of biomolecular systems. We specify the structure and dynamics of biochemical networks in a variant of the stochastic P-calculus, yielding a model which is mathematically welldefined and biologically faithful. We adapt the operational semantics of the calculus to account for both the time and probability of biochemical reactions, and present a computer implementation of the calculus for biochemical simulations.
| Item Type: | Departmental Technical Report |
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| Department or Research center: | Information Engineering and Computer Science |
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| Subjects: | UNSPECIFIED |
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| Uncontrolled Keywords: | stochastic P-calculus, bioinformatics, stochastic simulation |
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| Additional Information: | Appeared in Information Processing Letters 80 (2001) 25-31 |
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| Report Number: | DIT-02-018 |
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| Repository staff approval on: | 21 Jan 2003 |
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